Strain Passport
NCTC 9001 Escherichia coli

overview

species name

all known species names for this strain
*Escherichia coli*

type strain of

Escherichia coli

16S Sequence

AB681728 (LTP: X80725)

strain numbers

ACM 1803

AJ 2617

ATCC 11775

BCRC 10675

BTCC U5/41

CAPM 6101

CCM 5172

CCRC 10675

CCT 0547

CCT 1357

CCTM 2067

CCTM La 2067

CCUG 24

CCUG 29300

CDBB 964

CECT 515

CGMCC 1.2389

CGMCC 1.2993

CIP 54.8

CIP 54.8T^T

CN 4382

CNCTC 6859

CNCTC Eck 206/59

CNCTC Eck 58/59

DSM 30083

DSMZ 30083

ELI 50

F. Oerskov

FIRDI 675

GISK 240001

IAM 12119

ICMP 15663

JCM 1649

K. Lincoln

Kauffmann U5/41

KCTC 2441

LMD 54.8

LMG 2092

LRA 73.08.009

NBIMCC 3398

NBRC 102203

NCAIM B.01874

NCCB 54008

NCDO 1989

NCFB 1989

NCIB 11943

NCIMB 11943

NCTC 9001

NCTC 9001 U5/41^T

NCTC 9001.^T

NZRM 3309

PCM 172

PCM 321

R. Sakazaki

SSIC U 5/41

strain U 5/41

U 5-41

U5/41

USCC 2054

USCC 2520

VTT E-94564

WDCM 00090

WDCM 00155

Y. Kosako 82039

availability map

strain browser

SeqRank

history

This Histri was manually curated (last saved on 2008-08-21).

Histri

sequences

41 items found, displaying 1 to 25.[First/Prev] 1, 2 [Next/Last]

accession#	description	strainnumber	date	length
X80725	E.coli (ATCC 11775T) gene for 16S rRNA	ATCC 11775 T ATCC 11775 is type strain of: Escherichia coli	1996/03/29	1450
AF052254	Escherichia coli DNA gyrase A (gyrA) gene, partial cds	ATCC 11775 T ATCC 11775 is type strain of: Escherichia coli	1998/09/09	589
AB028474	Escherichia coli fliC gene for flagellin, complete cds, strain:U5-41	U 5-41 T U 5-41 is type strain of: Escherichia coli	1999/10/05	2329
AF173327	Escherichia coli strain DSM 30083 beta-D-glucuronidase gene, partial cds	DSM 30083 T DSM 30083 is type strain of: Escherichia coli	2000/04/17	126
AJ278710	Escherichia coli 23S rRNA gene, strain K12 DSM 30083T	DSM 30083 T DSM 30083 is type strain of: Escherichia coli	2001/01/06	2900
AX110241	Sequence 974 from Patent WO0123604	ATCC 11775 T ATCC 11775 is type strain of: Escherichia coli	2001/04/30	804
AX110211	Sequence 944 from Patent WO0123604	ATCC 11775 T ATCC 11775 is type strain of: Escherichia coli	2001/04/30	798
AB083821	Escherichia coli gyrB gene for gyrase B, partial cds, strain:ATCC11775	ATCC 11775 T ATCC 11775 is type strain of: Escherichia coli	2002/08/06	1171
AJ549508	Escherichia coli partial 23S rRNA gene, type strain DSM 30083T	DSM 30083 T DSM 30083 is type strain of: Escherichia coli	2003/03/12	830
AY249992	Escherichia coli strain U5-41 FliC gene, complete cds	U 5-41 T U 5-41 is type strain of: Escherichia coli	2003/04/23	1758
DQ859857	Escherichia coli strain ICMP 15663 recombinase A (recA) gene, partial cds	DSM 30083 T DSM 30083 is type strain of: Escherichia coli	2006/08/25	590
DQ859848	Escherichia coli strain ICMP 15663 carbamoylphosphate synthetase small subunit (carA) gene, partial cds	DSM 30083 T DSM 30083 is type strain of: Escherichia coli	2006/08/25	983
DQ859781	Escherichia coli strain ICMP 15663 ATP synthase beta subunit (atpD) gene, partial cds	DSM 30083 T DSM 30083 is type strain of: Escherichia coli	2006/08/25	1264
AB242925	Escherichia coli rpoD gene for RNA polymerase sigma-subunit, complete cds, strain: JCM1649	JCM 1649 T JCM 1649 is type strain of: Escherichia coli	2007/01/31	679
AB242918	Escherichia coli gyrB gene for gyrase B, complete cds, strain: JCM1649	JCM 1649 T JCM 1649 is type strain of: Escherichia coli	2007/01/31	999
AB242910	Escherichia coli gene for 16S ribosomal RNA, partial sequence, strain: JCM1649	JCM 1649 T JCM 1649 is type strain of: Escherichia coli	2007/01/31	1110
EF445891	Escherichia coli strain ATCC 11775 tna operon, complete sequence	ATCC 11775 T ATCC 11775 is type strain of: Escherichia coli	2007/03/21	3050
EU010107	Escherichia coli strain CIP 54.8 RNA polymerase beta subunit (rpoB) gene, partial cds	CIP 54.8 T CIP 54.8 is type strain of: Escherichia coli	2007/07/26	501
EU010080	Escherichia coli strain CIP 54.8 CTP synthetase (pyrG) gene, partial cds	CIP 54.8 T CIP 54.8 is type strain of: Escherichia coli	2007/07/26	306
EU010053	Escherichia coli strain CIP 54.8 leucine tRNA synthetase (leuS) gene, partial cds	CIP 54.8 T CIP 54.8 is type strain of: Escherichia coli	2007/07/26	642
EU010026	Escherichia coli strain CIP 54.8 elongation factor EF-G (fusA) gene, partial cds	CIP 54.8 T CIP 54.8 is type strain of: Escherichia coli	2007/07/26	633
EU014689	Escherichia coli strain KCTC 2441 16S ribosomal RNA gene, partial sequence	KCTC 2441 T KCTC 2441 is type strain of: Escherichia coli	2007/09/11	1541
EU014679	Escherichia coli strain KCTC 2441 PutP (putP) gene, partial cds	KCTC 2441 T KCTC 2441 is type strain of: Escherichia coli	2007/09/11	1858
EU014669	Escherichia coli strain KCTC 2441 Mdh (mdh) gene, partial cds	KCTC 2441 T KCTC 2441 is type strain of: Escherichia coli	2007/09/11	826
EU014658	Escherichia coli strain KCTC 2441 ManB (manB) gene, partial cds	KCTC 2441 T KCTC 2441 is type strain of: Escherichia coli	2007/09/11	769

41 items found, displaying 1 to 25.[First/Prev] 1, 2 [Next/Last]

publications

38 items found, displaying 1 to 25.[First/Prev] 1, 2 [Next/Last]


Martin MC, Martinez N, del Rio B, Ladero V, Fernandez M, Alvarez MA A novel real-time polymerase chain reaction-based method for the detection and quantification of lactose-fermenting Enterobacteriaceae in the dairy and other food industries J Dairy Sci 93(3), 860-867, 2010
Chang HW, Nam YD, Jung MY, Kim KH, Roh SW, Kim MS, Jeon CO, Yoon JH, Bae JW Statistical superiority of genome-probing microarrays as genomic DNA-DNA hybridization in revealing the bacterial phylogenetic relationship compared to conventional methods J Microbiol Methods 75(3), 523-530, 2008
Young JM, Park DC Relationships of plant pathogenic enterobacteria based on partial atpD, carA, and recA as individual and concatenated nucleotide and peptide sequences Syst Appl Microbiol 30(5), 343-354, 2007
Salerno A, Deletoile A, Lefevre M, Ciznar I, Krovacek K, Grimont P, Brisse S Recombining population structure of Plesiomonas shigelloides (Enterobacteriaceae) revealed by multilocus sequence typing J Bacteriol 189(21), 7808-7818, 2007
Bernasconi C, Volponi G, Picozzi C, Foschino R Use of the tna operon as a new molecular target for Escherichia coli detection Appl Environ Microbiol 73(19), 6321-6325, 2007
Matsuura T, Shinohara H, Inoue Y, Azegami K, Tsushima S, Tsukamoto T, Mizuno A Erwinia isolates from the bacterial shoot blight of pear in Japan are closely related to Erwinia pyrifoliae based on phylogenetic analyses of gyrB and rpoD genes J Gen Plant Pathol 73, 53-58, 2007
Enterococci in Water by Membrane Filtration Using membrane-Enterococcus-Esculin Iron Agar.Washington, DC: Environmental Protection Agency (journal unknown) , EPA EPA Method 1106.1, 2005
Escherichia coli in Water by Membrane Filtration using membrane-Thermotolerant Escherichia coli Agar (mTEC).Washington, DC: Environmental Protection Agency (journal unknown) , EPA EPA Method 1103.1, 2005
Escherichia coli in Water by Membrane Filtration Using Modified membrane-Thermotolerant Escherichia coli Agar.Washington, DC: Environmental Protection Agency (journal unknown) , EPA EPA Method 1603, 2005
Enterococci in Water by Membrane Filtration Using membrane-Enterococcus Indoxyl-B-D-Glucoside Agar.Washington, DC: Environmental Protection Agency (journal unknown) , EPA EPA Method 1600, 2005
Fecal Coliforms in Sewage Sludge (Biosolids) by Multiple-Tube Fermenation using Lauryl Tryptose Broth (LTB) and EC Medium.Washington, DC: Environmental Protection Agency (journal unknown) , EPA EPA Method 1680, 2005
Mitterer G, Huber M, Leidinger E, Kirisits C, Lubitz W, Mueller MW, Schmidt WM Microarray-based identification of bacteria in clinical samples by solid-phase PCR amplification of 23S ribosomal DNA sequences J Clin Microbiol 42(3), 1048-1057, 2004
Huys G, Cnockaert M, Janda JM, Swings J Escherichia albertii sp. nov., a diarrhoeagenic species isolated from stool specimens of Bangladeshi children Int J Syst Evol Microbiol 53(3), 807-810, 2003
Wang L, Rothemund D, Curd H, Reeves PR Species-wide variation in the Escherichia coli flagellin (H-antigen) gene J Bacteriol 185(9), 2936-2943, 2003
Willems A, Fernandez-Lopez M, Munoz-Adelantado E, Goris J, De Vos P, Martinez-Romero E, Toro N, Gillis M Description of new Ensifer strains from nodules and proposal to transfer Ensifer adhaerens Casida 1982 to Sinorhizobium as Sinorhizobium adhaerens comb. nov. Request for an Opinion Int J Syst Evol Microbiol 53(4), 1207-1217, 2003
Microbiology of food and animal feeding stuffs--Guidelines on preparation and production of culture media-- Part 2: Practical guidelines on performance testing of culture media..Geneva (Switzerland): International Organization for Standardization/ANSI (journal unknown) , ISO ISO 11133-2, 2003
Food Microbiology. Methods2.12: Examination for specific organisms--Escherichia coli in bivalve molluscs--Rapid method.Sydney, NSW, Australia: Standards Australia (journal unknown) , Standards Australia AS/NZS 1766.2.12, 2002
Fukushima M, Kakinuma K, Kawaguchi R Phylogenetic analysis of Salmonella, Shigella, and Escherichia coli strains on the basis of the gyrB gene sequence J Clin Microbiol 40(8), 2779-2785, 2002
Water microbiology. Method 19: Examination for thermophilic Campylobacter spp. --Membrane filtration.Sydney, NSW, Australia: Standards Australia (journal unknown) , Standards Australia AS/NZS 4276.19, 2001
Fuchs BM, Syutsubo K, Ludwig W, Amann R In situ accessibility of Escherichia coli 23S rRNA to fluorescently labeled oligonucleotide probes Appl Environ Microbiol 67(2), 961-968, 2001
Farnleitner AH, Kreuzinger N, Kavka GG, Grillenberger S, Rath J, Mach RL Simultaneous detection and differentiation of Escherichia coli populations from environmental freshwaters by means of sequence variations in a fragment of the beta-D-glucuronidase gene Appl Environ Microbiol 66(4), 1340-1346, 2000
Water microbiology. Method 16: Bactericidal efficiency of water disinfecting tablets.Sydney, NSW, Australia: Standards Australia (journal unknown) , Standards Australia AS/NZS 4276.16, 1999
Weigel LM, Steward CD, Tenover FC gyrA mutations associated with fluoroquinolone resistance in eight species of Enterobacteriaceae Antimicrob Agents Chemother 42(10), 2661-2667, 1998
Lange JL, Thorne PS, Lynch N Application of flow cytometry and fluorescent in situ hybridization for assessment of exposures to airborne bacteria Appl Environ Microbiol 63(4), 1557-1563, 1997
Cilia V, Lafay B, Christen R Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level Mol Biol Evol 13(3), 451-461, 1996

38 items found, displaying 1 to 25.[First/Prev] 1, 2 [Next/Last]

Strain PassportNCTC 9001 Escherichia coli

Strain Passport
NCTC 9001 Escherichia coli