Strain Passport
CCRC 13518 Bradyrhizobium japonicum

overview

species name

all known species names for this strain
*Bradyrhizobium japonicum*

type strain of

Bradyrhizobium japonicum

16S Sequence

AP012206 (LTP: U69638)

strain numbers

3I1b6

3I1B6

Aso 6

ATCC 10324

BCRC 13518

CCRC 11091

CCRC 13518

CCTM La 3681

CCUG 27876

CECT 530

CIP 106093

DSM 30131

DSMZ 30131

Erdman 3I1b6

Erdmann L.W 3I1b6

Erdmann L.W. 3I1b6

Erdmann L.W., 3I1b6

HAMBI 2314

IAM 12608

ICMP 2864

ICMP 9301

IFO 14783

JCM 20679

KACC 10645

KCTC 2422

LMG 6138

NBRC 14783

NCIB 11477

NCIMB 11477

NRRL B-4507

NRRL L-241

NZP 5549

NZRCC 10317

OUT 30002

PDDCC 2648^T

PDDCC 2684^T

PDDCC 2864

USDA 505

USDA 6

VKM B-1967

availability map

strain browser

SeqRank

history

This Histri was manually curated (last saved on 2008-08-21).

Histri

sequences

8,733 items found, displaying 1 to 25.[First/Prev] 1, 2, 3, 4, 5, 6, 7, 8 [Next/Last]

accession#	description	strainnumber	date	length
HG790247	TPA: Bradyrhizobium japonicum USDA 6 transfer-messenger mRNA Brady_japon_USD6, two-piece tmRNA, Coding RNA	USDA 6 T USDA 6 is type strain of: Bradyrhizobium japonicum	2013/11/22	210
HG790246	TPA: Bradyrhizobium japonicum USDA 6 transfer-messenger mRNA Brady_japon_USD6, two-piece tmRNA, Acceptor RNA	USDA 6 T USDA 6 is type strain of: Bradyrhizobium japonicum	2013/11/22	80
JX135448	Bradyrhizobium japonicum USDA 6 type III effector NopAN (nopAN) gene, complete cds	USDA 6 T USDA 6 is type strain of: Bradyrhizobium japonicum	2013/03/17	837
JX135447	Bradyrhizobium japonicum USDA 6 type III effector NopBC (nopBC) gene, complete cds	USDA 6 T USDA 6 is type strain of: Bradyrhizobium japonicum	2013/03/17	822
JX135446	Bradyrhizobium japonicum USDA 6 type III effector NopAG (nopAG) gene, complete cds	USDA 6 T USDA 6 is type strain of: Bradyrhizobium japonicum	2013/03/17	543
JX135445	Bradyrhizobium japonicum USDA 6 type III effector NopAC (nopAC) gene, complete cds	USDA 6 T USDA 6 is type strain of: Bradyrhizobium japonicum	2013/03/17	1533
JX135444	Bradyrhizobium japonicum USDA 6 type III effector NopY (nopY) gene, complete cds	USDA 6 T USDA 6 is type strain of: Bradyrhizobium japonicum	2013/03/17	894
JX135443	Bradyrhizobium japonicum USDA 6 type III effector NopAP (nopAP) gene, partial cds	USDA 6 T USDA 6 is type strain of: Bradyrhizobium japonicum	2013/03/17	1790
JX135442	Bradyrhizobium japonicum USDA 6 type III effector NopAH (nopAH) gene, complete cds	USDA 6 T USDA 6 is type strain of: Bradyrhizobium japonicum	2013/03/17	423
JX135441	Bradyrhizobium japonicum USDA 6 type III effector NopAM (nopAM) gene, complete cds	USDA 6 T USDA 6 is type strain of: Bradyrhizobium japonicum	2013/03/17	381
JX135440	Bradyrhizobium japonicum USDA 6 type III effector NopAB (nopAB) gene, complete cds	USDA 6 T USDA 6 is type strain of: Bradyrhizobium japonicum	2013/03/17	576
JX135439	Bradyrhizobium japonicum USDA 6 type III effector NopAL (nopAL) gene, complete cds	USDA 6 T USDA 6 is type strain of: Bradyrhizobium japonicum	2013/03/17	537
JX135438	Bradyrhizobium japonicum USDA 6 type III effector NopE2 (nopE2) gene, complete cds	USDA 6 T USDA 6 is type strain of: Bradyrhizobium japonicum	2013/03/17	1539
JX135437	Bradyrhizobium japonicum USDA 6 type III effector NopAJ (nopAJ) gene, complete cds	USDA 6 T USDA 6 is type strain of: Bradyrhizobium japonicum	2013/03/17	909
JX135436	Bradyrhizobium japonicum USDA 6 type III effector NopAK (nopAK) gene, complete cds	USDA 6 T USDA 6 is type strain of: Bradyrhizobium japonicum	2013/03/17	381
JX135435	Bradyrhizobium japonicum USDA 6 type III effector NopAA (nopAA) gene, complete cds	USDA 6 T USDA 6 is type strain of: Bradyrhizobium japonicum	2013/03/17	807
JX135434	Bradyrhizobium japonicum USDA 6 type III effector NopM1-1 (nopM1-1) gene, complete cds	USDA 6 T USDA 6 is type strain of: Bradyrhizobium japonicum	2013/03/17	1863
JX135433	Bradyrhizobium japonicum USDA 6 type III effector NopZ (nopZ) gene, complete cds	USDA 6 T USDA 6 is type strain of: Bradyrhizobium japonicum	2013/03/17	537
JX135432	Bradyrhizobium japonicum USDA 6 type III effector NopP (nopP) gene, complete cds	USDA 6 T USDA 6 is type strain of: Bradyrhizobium japonicum	2013/03/17	735
JX135431	Bradyrhizobium japonicum USDA 6 type III effector NopAR (nopAR) gene, complete cds	USDA 6 T USDA 6 is type strain of: Bradyrhizobium japonicum	2013/03/17	2316
JX135430	Bradyrhizobium japonicum USDA 6 type III effector NopAF (nopAF) gene, complete cds	USDA 6 T USDA 6 is type strain of: Bradyrhizobium japonicum	2013/03/17	2214
JX135429	Bradyrhizobium japonicum USDA 6 type III effector NopAZ (nopAZ) gene, complete cds	USDA 6 T USDA 6 is type strain of: Bradyrhizobium japonicum	2013/03/17	1425
JX135428	Bradyrhizobium japonicum USDA 6 type III effector NopAD (nopAD) gene, complete cds	USDA 6 T USDA 6 is type strain of: Bradyrhizobium japonicum	2013/03/17	1041
JX135427	Bradyrhizobium japonicum USDA 6 type III effector NopU (nopU) gene, complete cds	USDA 6 T USDA 6 is type strain of: Bradyrhizobium japonicum	2013/03/17	639
JX135426	Bradyrhizobium japonicum USDA 6 type III effector NopE1 (nopE1) gene, complete cds	USDA 6 T USDA 6 is type strain of: Bradyrhizobium japonicum	2013/03/17	1455

8,733 items found, displaying 1 to 25.[First/Prev] 1, 2, 3, 4, 5, 6, 7, 8 [Next/Last]

publications

44 items found, displaying 1 to 25.[First/Prev] 1, 2 [Next/Last]


Kimbrel JA, Thomas WJ, Jiang Y, Creason AL, Thireault CA, Sachs JL, Chang JH Mutualistic Co-evolution of Type III Effector Genes in Sinorhizobium fredii and Bradyrhizobium japonicum PLoS Pathog 9(2), e1003204, 2013
Zhang YM, Tian CF, Sui XH, Chen WF, Chen WX Robust markers reflecting phylogeny and taxonomy of rhizobia PLoS One 7(9), e44936, 2012
van Berkum PB, Elia P, Song Q, Eardly BD Development and application of a multilocus sequence analysis method for the identification of genotypes within the genus Bradyrhizobium and for establishing nodule occupancy of soybean (Glycine max L. Merr) Mol Plant Microbe Interact , 2011
Kaneko T, Maita S, Hirakawa H, Uchiike N, Minamisawa K, Watanabe A, Sato S Complete Genome Sequence of the Soybean Symbiont Bradyrhizobium japonicum Strain USDA6T Gene 2, 763-787, 2011
Kaneko T, Maita S, Hirakawa H, Uchiike N, Minamisawa K, Watanabe A, Sato S Complete Genome Sequence of the Soybean Symbiont Bradyrhizobium japonicum Strain USDA6T (misc) Genes (Basel) 2, 763-787, 2011
Vinuesa P, Rojas-Jimenez K, Contreras-Moreira B, Mahna SK, Prasad BN, Moe H, Selvaraju SB, Thierfelder H, Werner D Multilocus sequence analysis for assessment of the biogeography and evolutionary genetics of four Bradyrhizobium species that nodulate soybeans on the asiatic continent Appl Environ Microbiol 74(22), 6987-6996, 2008
Martens M, Dawyndt P, Coopman R, Gillis M, De Vos P, Willems A Advantages of multilocus sequence analysis for taxonomic studies: a case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium) Int J Syst Evol Microbiol 58(1), 200-214, 2008
Martens M, Delaere M, Coopman R, De Vos P, Gillis M, Willems A Multilocus sequence analysis of Ensifer and related taxa Int J Syst Evol Microbiol 57(3), 489-503, 2007
Stepkowski T, Hughes CE, Law IJ, Markiewicz L, Gurda D, Chlebicka A, Moulin L Diversification of lupine Bradyrhizobium strains: evidence from nodulation gene trees Appl Environ Microbiol 73(10), 3254-3264, 2007
Ormeno-Orrillo E, Vinuesa P, Zuniga-Davila D, Martinez-Romero E Molecular diversity of native bradyrhizobia isolated from Lima bean (Phaseolus lunatus L.) in Peru Syst Appl Microbiol 29(3), 253-262, 2006
Sameshima-Saito R, Chiba K, Minamisawa K Correlation of Denitrifying Capability with the Existence of nap, nir, nor and nos Genes in Diverse Strains of Soybean Bradyrhizobia Microbes Environ 21, 174-184, 2006
Kwon SW, Park JY, Kim JS, Kang JW, Cho YH, Lim CK, Parker MA, Lee GB Phylogenetic analysis of the genera Bradyrhizobium, Mesorhizobium, Rhizobium and Sinorhizobium on the basis of 16S rRNA gene and internally transcribed spacer region sequences Int J Syst Evol Microbiol 55(1), 263-270, 2005
Vinuesa P, Silva C, Werner D, Martinez-Romero E Population genetics and phylogenetic inference in bacterial molecular systematics: the roles of migration and recombination in Bradyrhizobium species cohesion and delineation Mol Phylogenet Evol 34(1), 29-54, 2005
Dedysh SN, Ricke P, Liesack W NifH and NifD phylogenies: an evolutionary basis for understanding nitrogen fixation capabilities of methanotrophic bacteria Microbiology 150(5), 1301-1313, 2004
Cantera JJ, Kawasaki H, Seki T The nitrogen-fixing gene (nifH) of Rhodopseudomonas palustris: a case of lateral gene transfer? Microbiology 150(7), 2237-2246, 2004
Gueneau de Novoa P, Williams KP The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts Nucleic Acids Res 32(Databaseissue), D104-D108, 2004
Nanba K, King GM, Dunfield K Analysis of facultative lithotroph distribution and diversity on volcanic deposits by use of the large subunit of ribulose 1,5-bisphosphate carboxylase/oxygenase Appl Environ Microbiol 70(4), 2245-2253, 2004
Saeki Y, Aimi N, Hashimoto M, Tsukamoto S, Kaneko A, Yoshida N, Nagatomo Y, Akao S Grouping of Bradyrhizobium USDA strains by Sequence Analysis of 16S rDNA and 16S-23S rDNA Internal Transcribed Spacer Region Soil Sci Plant Nutr 50, 517-525, 2004
Ouattara AS, Assih EA, Thierry S, Cayol JL, Labat M, Monroy O, Macarie H Bosea minatitlanensis sp. nov., a strictly aerobic bacterium isolated from an anaerobic digester Int J Syst Evol Microbiol 53(5), 1247-1251, 2003
Khamis A, Colson P, Raoult D, Scola BL Usefulness of rpoB gene sequencing for identification of Afipia and Bosea species, including a strategy for choosing discriminative partial sequences Appl Environ Microbiol 69(11), 6740-6749, 2003
Sameshima R, Isawa T, Sadowsky MJ, Hamada T, Kasai H, Shutsrirung A, Mitsui H, Minamisawa K Phylogeny and distribution of extra-slow-growing Bradyrhizobium japonicum harboring high copy numbers of RSalpha, RSbeta and IS1631 FEMS Microbiol Ecol 44(2), 191-202, 2003
King GM Molecular and culture-based analyses of aerobic carbon monoxide oxidizer diversity Appl Environ Microbiol 69(12), 7257-7265, 2003
Parker MA, Lafay B, Burdon JJ, van Berkum P Conflicting phylogeographic patterns in rRNA and nifD indicate regionally restricted gene transfer in Bradyrhizobium Microbiology 148(8), 2557-2565, 2002
Clapp JP, Mansur I, Dodd JC, Jeffries P Ribotyping of rhizobia nodulating Acacia mangium and Paraserianthes falcataria from different geographical areas in Indonesia using PCR-RFLP-SSCP (PRS) and sequencing Environ Microbiol 3(4), 273-280, 2001
Willems A, Coopman R, Gillis M Comparison of sequence analysis of 16S-23S rDNA spacer regions, AFLP analysis and DNA-DNA hybridizations in Bradyrhizobium Int J Syst Evol Microbiol 51(2), 623-632, 2001

44 items found, displaying 1 to 25.[First/Prev] 1, 2 [Next/Last]

Strain PassportCCRC 13518 Bradyrhizobium japonicum

Strain Passport
CCRC 13518 Bradyrhizobium japonicum