Strain Passport
FIRDI 620 Bacteroides fragilis

accession#	description	strainnumber	date	length
JF803620	Bacteroides fragilis strain DSM 2151 adenylosuccinate synthetase (purA) gene, partial cds	DSM 2151 T DSM 2151 is type strain of: Bacteroides fragilis	2011/12/12	518
JF803615	Bacteroides fragilis strain DSM 2151 putative malate dehydrogenase (mdh) gene, partial cds	DSM 2151 T DSM 2151 is type strain of: Bacteroides fragilis	2011/12/12	513
JF803610	Bacteroides fragilis strain DSM 2151 adenosine kinase (adk) gene, partial cds	DSM 2151 T DSM 2151 is type strain of: Bacteroides fragilis	2011/12/12	464
JF803605	Bacteroides fragilis strain DSM 2151 isocitrate dehydrogenase kinase/phosphatase (aceK) gene, partial cds	DSM 2151 T DSM 2151 is type strain of: Bacteroides fragilis	2011/12/12	565
AB619989	Bacteroides fragilis rpoB gene for RNA polymerase beta subunit, partial cds, strain: JCM 11019	JCM 11019 T JCM 11019 is type strain of: Bacteroides fragilis	2011/09/22	315
AB619951	Bacteroides fragilis recA gene for recombinase A, partial cds, strain: JCM 11019	JCM 11019 T JCM 11019 is type strain of: Bacteroides fragilis	2011/09/22	627
AB619913	Bacteroides fragilis gyrB gene for DNA gyrase subunit B, partial cds, strain: JCM 11019	JCM 11019 T JCM 11019 is type strain of: Bacteroides fragilis	2011/09/22	1083
AB619875	Bacteroides fragilis dnaJ gene for chaperone protein dnaJ, partial cds, strain: JCM 11019	JCM 11019 T JCM 11019 is type strain of: Bacteroides fragilis	2011/09/22	885
HQ012027	Bacteroides fragilis strain DSM 2151 16S ribosomal RNA gene, partial sequence	DSM 2151 T DSM 2151 is type strain of: Bacteroides fragilis	2011/08/10	933
HV223927	JP 2003511015-A/929: HIGHLY CONSERVED GENES AND THEIR USE TO GENERATE SPECIES-SPECIFIC, GENUS-SPECIFIC, FAMILY-SPECIFIC, GROUP-SPECIFIC AND UNIVERSAL NUCLEIC ACID PROBES AND AMPLIFICATION PRIMERS TO RAPIDLY DETECT AND IDENTIFY ALGAL, ARCHAEAL, BACTERIAL, FUNGAL AND PARASITICAL MICROOR-GANISMS FROM CLINICAL SPECIMENS FOR DIAGNOSIS	NCTC 9343 T NCTC 9343 is type strain of: Bacteroides fragilis	2011/07/15	448
HH770820	Sequence 7007 from Patent EP2221382	NCTC 9343 T NCTC 9343 is type strain of: Bacteroides fragilis	2010/11/10	996
HH770818	Sequence 7005 from Patent EP2221382	NCTC 9343 T NCTC 9343 is type strain of: Bacteroides fragilis	2010/11/10	1065
HH770143	Sequence 6330 from Patent EP2221382	NCTC 9343 T NCTC 9343 is type strain of: Bacteroides fragilis	2010/11/10	747
HH767624	Sequence 3811 from Patent EP2221382	NCTC 9343 T NCTC 9343 is type strain of: Bacteroides fragilis	2010/11/10	663
HH767622	Sequence 3809 from Patent EP2221382	NCTC 9343 T NCTC 9343 is type strain of: Bacteroides fragilis	2010/11/10	663
HH766539	Sequence 2726 from Patent EP2221382	NCTC 9343 T NCTC 9343 is type strain of: Bacteroides fragilis	2010/11/10	735
HH765756	Sequence 1943 from Patent EP2221382	NCTC 9343 T NCTC 9343 is type strain of: Bacteroides fragilis	2010/11/10	2127
HH763926	Sequence 113 from Patent EP2221382	NCTC 9343 T NCTC 9343 is type strain of: Bacteroides fragilis	2010/11/10	1314
HM353070	Bacteroides fragilis strain ATCC 25285 RNA polymerase beta subunit-like (rpoB) gene, partial sequence	ATCC 25285 T ATCC 25285 is type strain of: Bacteroides fragilis	2010/10/10	583
HM353053	Bacteroides fragilis strain ATCC 25285 putative phosphoglucomutase gene, partial cds	ATCC 25285 T ATCC 25285 is type strain of: Bacteroides fragilis	2010/10/10	540
HM353036	Bacteroides fragilis strain ATCC 25285 NADP-specific glutamate dehydrogenase-like gene, partial sequence	ATCC 25285 T ATCC 25285 is type strain of: Bacteroides fragilis	2010/10/10	463
HM353019	Bacteroides fragilis strain ATCC 25285 putative esterase gene, partial cds	ATCC 25285 T ATCC 25285 is type strain of: Bacteroides fragilis	2010/10/10	509
HM353002	Bacteroides fragilis strain ATCC 25285 16S ribosomal RNA gene, partial sequence	ATCC 25285 T ATCC 25285 is type strain of: Bacteroides fragilis	2010/10/10	383
HD029013	Sequence 104278 from Patent EP2199304	NCTC 9343 T NCTC 9343 is type strain of: Bacteroides fragilis	2010/07/13	1275
HD029011	Sequence 104276 from Patent EP2199304	NCTC 9343 T NCTC 9343 is type strain of: Bacteroides fragilis	2010/07/13	1440

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publications

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Sakamoto M, Ohkuma M Identification and classification of the genus Bacteroides by multilocus sequence analysis Microbiology 157(12), 3388-3397, 2011
Bjerke GA, Wilson R, Storro O, Oyen T, Johnsen R, Rudi K Mother-to-Child Transmission of and Multiple-Strain Colonization by Bacteroides fragilis in a Cohort of Mothers and Their Children Appl Environ Microbiol 77(23), 8318-8324, 2011
Sakamoto M, Suzuki N, Benno Y hsp60 and 16S rRNA gene sequence relationships among species of the genus Bacteroides with the finding that Bacteroides suis and Bacteroides tectus are heterotypic synonyms of Bacteroides pyogenes Int J Syst Evol Microbiol 60(12), 2984-2990, 2010
Lin YT, Vaneechoutte M, Huang AH, Teng LJ, Chen HM, Su SL, Chang TC Identification of clinically important anaerobic bacteria by an oligonucleotide array J Clin Microbiol 48(4), 1283-1290, 2010
Senoura T, Taguchi H, Ito S, Hamada S, Matsui H, Fukiya S, Yokota A, Watanabe J, Wasaki J, Ito S Identification of the cellobiose 2-epimerase gene in the genome of Bacteroides fragilis NCTC 9343 Biosci Biotechnol Biochem 73(2), 400-406, 2009
Coyne MJ, Chatzidaki-Livanis M, Paoletti LC, Comstock LE Role of glycan synthesis in colonization of the mammalian gut by the bacterial symbiont Bacteroides fragilis Proc Natl Acad Sci U S A 105(35), 13099-13104, 2008
Coyne MJ, Chatzidaki-Livanis M, Paoletti LC, Comstock LE Role of glycan synthesis in colonization of the mammalian gut by the bacterial symbiont Bacteroides fragilis Proc Natl Acad Sci USA 105(35), 13098-13103, 2008
Ko KS, Kuwahara T, Haehwa L, Yoon Y-J, Kim B-J, Lee K-H, Ohnishi Y, Kook Y-H RNA polymerase beta-subunit gene (rpoB) sequence analysis for the identification of Bacteroides spp Clin Microbiol Infect 13(1), 48-54, 2007
Liu QP, Sulzenbacher G, Yuan H, Bennett EP, Pietz G, Saunders K, Spence J, Nudelman E, Levery SB, White T, Neveu JM, Lane WS, Bourne Y, Olsson ML, Henrissat B, Clausen H Bacterial glycosidases for the production of universal red blood cells Nat Biotechnol 25(4), 454-464, 2007
Claros MC, Claros ZC, Hecht DW, Citron DM, Goldstein EJ, Silva J Jr, Tang-Feldman Y, Rodloff AC Characterization of the Bacteroides fragilis pathogenicity island in human blood culture isolates Anaerobe 12(1), 17-22, 2006
Cerdeno-Tarraga AM, Patrick S, Crossman LC, Blakely G, Abratt V, Lennard N, Poxton I, Duerden B, Harris B, Quail MA, Barron A, Clark L, Corton C, Doggett J, Holden MT, Larke N, Line A, Lord A, Norbertczak H, Ormond D, Price C, Rabbinowitsch E, Woodward J, Barrell B, Parkhill J Extensive DNA inversions in the B. fragilis genome control variable gene expression Science 307(5714), 1463-1465, 2005
Hill JE, Penny SL, Crowell KG, Goh SH, Hemmingsen SM cpnDB: a chaperonin sequence database Genome Res 14(8), 1669-1675, 2004
Matsuo Y, Suzuki M, Kasai H, Shizuri Y, Harayama S Isolation and phylogenetic characterization of bacteria capable of inducing differentiation in the green alga Monostroma oxyspermum Environ Microbiol 5(1), 25-35, 2003
Bennett MJ, McKnight SL, Coleman JP Cloning and characterization of the NAD-dependent 7alpha-Hydroxysteroid dehydrogenase from Bacteroides fragilis Curr Microbiol 47(6), 475-484, 2003
Medical microbiology--Culture media -- Part 4: Transport systems for specimens containing bacteria.Berlin, Germany: Deutsches Institut fur Normung; DIN DIN 58942-4 (journal unknown) , 2003, 2003
Liu C, Song Y, McTeague M, Vu AW, Wexler H, Finegold SM Rapid identification of the species of the Bacteroides fragilis group by multiplex PCR assays using group- and species-specific primers FEMS Microbiol Lett 222(1), 9-16, 2003
Wexler HM, Read EK, Tomzynski TJ Characterization of omp200, a porin gene complex from Bacteroides fragilis: omp121 and omp71, gene sequence, deduced amino acid sequences and predictions of porin structure Gene 283(1-2), 95-105, 2002
Gutacker M, Valsangiacomo C, Bernasconi MV, Piffaretti JC RecA and glnA sequences separate the bacteroides fragilis population into two genetic divisions associated with the antibiotic resistance genotypes cepA and cfiA J Med Microbiol 51(2), 123-130, 2002
Coyne MJ, Tzianabos AO, Mallory BC, Carey VJ, Kasper DL, Comstock LE Polysaccharide biosynthesis locus required for virulence of Bacteroides fragilis Infect Immun 69(7), 4342-4350, 2001
Coyne MJ, Kalka-Moll W, Tzianabos AO, Kasper DL, Comstock LE Bacteroides fragilis NCTC9343 produces at least three distinct capsular polysaccharides: cloning, characterization, and reassignment of polysaccharide B and C biosynthesis loci Infect Immun 68(11), 6176-6181, 2000
Comstock LE, Coyne MJ, Tzianabos AO, Pantosti A, Onderdonk AB, Kasper DL Analysis of a capsular polysaccharide biosynthesis locus of Bacteroides fragilis Infect Immun 67(7), 3525-3532, 1999
Moncrief JS, Duncan AJ, Wright RL, Barroso LA, Wilkins TD Molecular characterization of the fragilysin pathogenicity islet of enterotoxigenic Bacteroides fragilis Infect Immun 66(4), 1735-1739, 1998
Zhang G, Pan Q, Weintraub A Identification of Bacteroides fragilisby a modified immuno polymerase chain reaction (mIPCR), using a specific monoclonal antibody Anaerobe 4(4), 189-196, 1998
Takahata M, Nishino T Antibacterial activities of tosufloxacin against anaerobic bacteria and the electron micrograph of its bactericidal effects Chemotherapy 43(3), 153-158, 1997
DIN 58959-7. Qualitätsmanagement in der medizinischen Mikrobiologie. Teil 7: Allgemeine Anforderungen an das Mitführen von Kontrollstämmen. Beiblatt 2: ATCC- und DSM-Nummern häufig verwendeter Kontrollstämme (journal unknown) , 1997

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Strain PassportFIRDI 620 Bacteroides fragilis

Strain Passport
FIRDI 620 Bacteroides fragilis