Strain Passport
IAM 13628 Rhizobium sp.

overview

species name

all known species names for this strain
*Bradyrhizobium japonicum*
Rhizobium sp.

strain numbers

3I1B110

ACCC 15034

BCRC 13528

CCRC 13528

CCT 4249

IAM 13628

IFO 14792

JCM 10833

NBRC 14792

NIFTAL 102

NRRL B-4361

NRRL B-4450

R-12974

USDA 110

availability map

BRC strain browser

history

This Histri was manually curated (last saved on 2009-10-31).

Histri

sequences

2,711 items found, displaying 1 to 25.[First/Prev] 1, 2, 3, 4, 5, 6, 7, 8 [Next/Last]

accession#	description	strainnumber	date	length
JN686030	Bradyrhizobium japonicum USDA 110 phosphoribosylaminoimidazole-succinocarboxamide synthase (purC) gene, partial cds	USDA 110	2011/11/24	394
JN685980	Bradyrhizobium japonicum USDA 110 malate dehydrogenase (mdh) gene, partial cds	USDA 110	2011/11/24	451
JN685928	Bradyrhizobium japonicum USDA 110 acetolactate synthase (ilvI) gene, partial cds	USDA 110	2011/11/24	375
JN685873	Bradyrhizobium japonicum USDA 110 glyceraldehyde-3-phosphate dehydrogenase (gap) gene, partial cds	USDA 110	2011/11/24	446
JN685821	Bradyrhizobium japonicum USDA 110 aspartate semialdehyde dehydrogenase (asd) gene, partial cds	USDA 110	2011/11/24	434
JN685773	Bradyrhizobium japonicum USDA 110 GTP-binding membrane protein (lepA) gene, partial cds	USDA 110	2011/11/24	434
JN685725	Bradyrhizobium japonicum USDA 110 DNA topoisomerase IV subunit B (gyrB) gene, partial cds	USDA 110	2011/11/24	438
HV455545	JP 2011142867-A/27: Site-specific genetic recombination method based on TG1 integrase	USDA 110	2011/10/31	46
JA364037	Sequence 12 from Patent EP2319932	USDA 110	2011/05/16	888
JA134742	Sequence 12 from Patent EP2308977	USDA 110	2011/04/19	888
JA134710	Sequence 12 from Patent EP2308976	USDA 110	2011/04/19	888
JA062079	Sequence 12 from Patent EP2298901	USDA 110	2011/04/06	888
HH771686	Sequence 7873 from Patent EP2221382	USDA 110	2010/11/10	1047
HH771684	Sequence 7871 from Patent EP2221382	USDA 110	2010/11/10	1050
HH770714	Sequence 6901 from Patent EP2221382	USDA 110	2010/11/10	990
HH768417	Sequence 4604 from Patent EP2221382	USDA 110	2010/11/10	1722
HH767548	Sequence 3735 from Patent EP2221382	USDA 110	2010/11/10	729
HH765562	Sequence 1749 from Patent EP2221382	USDA 110	2010/11/10	2163
HH764674	Sequence 861 from Patent EP2221382	USDA 110	2010/11/10	1170
HH764672	Sequence 859 from Patent EP2221382	USDA 110	2010/11/10	1170
HH764670	Sequence 857 from Patent EP2221382	USDA 110	2010/11/10	1380
HH764668	Sequence 855 from Patent EP2221382	USDA 110	2010/11/10	1239
HH764215	Sequence 402 from Patent EP2221382	USDA 110	2010/11/10	732
HD032070	Sequence 107335 from Patent EP2199304	USDA 110	2010/07/13	675
HD032068	Sequence 107333 from Patent EP2199304	USDA 110	2010/07/13	675

2,711 items found, displaying 1 to 25.[First/Prev] 1, 2, 3, 4, 5, 6, 7, 8 [Next/Last]

publications

47 items found, displaying 1 to 25.[First/Prev] 1, 2 [Next/Last]


van Berkum PB, Elia P, Song Q, Eardly BD Development and application of a multilocus sequence analysis method for the identification of genotypes within the genus Bradyrhizobium and for establishing nodule occupancy of soybean (Glycine max L. Merr) Mol Plant Microbe Interact , 2011
Stajich JE, Wilke SK, Ahren D, Au CH, Birren BW, Borodovsky M, Burns C, Canback B, Casselton LA, Cheng CK, Deng J, Dietrich FS, Fargo DC, Farman ML, Gathman AC, Goldberg J, Guigo R, Hoegger PJ, Hooker JB, Huggins A, James TY, Kamada T, Kilaru S, Kodira C, Kues U, Kupfer D, Kwan HS, Lomsadze A, Li W, Lilly WW, Ma LJ, Mackey AJ, Manning G, Martin F, Muraguchi H, Natvig DO, Palmerini H, Ramesh MA, Rehmeyer CJ, Roe BA, Shenoy N, Stanke M, Ter-Hovhannisyan V, Tunlid A, Velagapudi R, Vision TJ, Zeng Q, Zolan ME, Pukkila PJ Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus) Proc Natl Acad Sci U S A 107(26), 11889-11894, 2010
Small SK, Puri S, Sangwan I, O'Brian MR Positive control of ferric siderophore receptor gene expression by the Irr protein in Bradyrhizobium japonicum J Bacteriol 191(5), 1361-1368, 2009
Yokoyama T Flavonoid-responsive nodY-lacZ expression in three phylogenetically different Bradyrhizobium groups Can J Microbiol 54(5), 401-410, 2008
Krol JE, Mazur A, Marczak M, Skorupska A Syntenic arrangements of the surface polysaccharide biosynthesis genes in Rhizobium leguminosarum Genomics 89(2), 237-247, 2007
Saeki Y, Aimi N, Hashimoto M, Tsukamoto S, Kaneko A, Yoshida N, Nagatomo Y, Akao S Grouping of Bradyrhizobium USDA strains by Sequence Analysis of 16S rDNA and 16S-23S rDNA Internal Transcribed Spacer Region Soil Sci Plant Nutr 50, 517-525, 2004
Wiedemann G, Muller P Use of Tn KPK2 for sequencing a 10.6-kb PstI DNA fragment of Bradyrhizobium japonicum and for the construction of aspA and ndvA mutants Arch Microbiol 181(6), 418-427, 2004
Green LS, Waters JK, Ko S, Emerich DW Comparative analysis of the Bradyrhizobium japonicum sucA region Can J Microbiol 49(4), 237-243, 2003
Sameshima R, Isawa T, Sadowsky MJ, Hamada T, Kasai H, Shutsrirung A, Mitsui H, Minamisawa K Phylogeny and distribution of extra-slow-growing Bradyrhizobium japonicum harboring high copy numbers of RSalpha, RSbeta and IS1631 FEMS Microbiol Ecol 44(2), 191-202, 2003
Mesa S, Velasco L, Manzanera ME, Delgado MJ, Bedmar EJ Characterization of the norCBQD genes, encoding nitric oxide reductase, in the nitrogen fixing bacterium Bradyrhizobium japonicum Microbiology 148(11), 3553-3560, 2002
Kaneko T, Nakamura Y, Sato S, Minamisawa K, Uchiumi T, Sasamoto S, Watanabe A, Idesawa K, Iriguchi M, Kawashima K, Kohara M, Matsumoto M, Shimpo S, Tsuruoka H, Wada T, Yamada M, Tabata S Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110 (supplement) DNA Res 9(6), 225-256, 2002
Kaneko T, Nakamura Y, Sato S, Minamisawa K, Uchiumi T, Sasamoto S, Watanabe A, Idesawa K, Iriguchi M, Kawashima K, Kohara M, Matsumoto M, Shimpo S, Tsuruoka H, Wada T, Yamada M, Tabata S Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110 DNA Res 9(6), 189-197, 2002
Tomkins JP, Wood TC, Stacey MG, Loh JT, Judd A, Goicoechea JL, Stacey G, Sadowsky MJ, Wing RA A marker-dense physical map of the Bradyrhizobium japonicum genome Genome Res 11(8), 1434-1440, 2001
Velasco L, Mesa S, Delgado MJ, Bedmar EJ Characterization of the nirK gene encoding the respiratory, Cu-containing nitrite reductase of Bradyrhizobium japonicum Biochim Biophys Acta 1521(1-3), 130-134, 2001
Fischer HM, Velasco L, Delgado MJ, Bedmar EJ, Scharen S, Zingg D, Gottfert M, Hennecke H One of two hemN genes in Bradyrhizobium japonicum is functional during anaerobic growth and in symbiosis J Bacteriol 183(4), 1300-1311, 2001
Louch HA, Miller KJ Synthesis of a low-molecular-weight form of exopolysaccharide by Bradyrhizobium japonicum USDA 110 Appl Environ Microbiol 67(2), 1011-1014, 2001
Sy A, Giraud E, Jourand P, Garcia N, Willems A, de Lajudie P, Prin Y, Neyra M, Gillis M, Boivin-Masson C, Dreyfus B Methylotrophic Methylobacterium bacteria nodulate and fix nitrogen in symbiosis with legumes J Bacteriol 183(1), 214-220, 2001
Koo HM, Kim YS Identification of active-site residues in Bradyrhizobium japonicum malonyl-coenzyme A synthetase Arch Biochem Biophys 378(1), 167-174, 2000
Westenberg DJ, Guerinot ML Succinate dehydrogenase (Sdh) from Bradyrhizobium japonicum is closely related to mitochondrial Sdh J Bacteriol 181(15), 4676-4679, 1999
Lorite MJ, Sanjuan J, Velasco L, Olivares J, Bedmar EJ Characterization of Bradyrhizobium japonicum pcaBDC genes involved in 4-hydroxybenzoate degradation Biochim Biophys Acta 1397(3), 257-261, 1998
Becker BU, Kosch K, Parniske M, Muller P Exopolysaccharide (EPS) synthesis in Bradyrhizobium japonicum: sequence, operon structure and mutational analysis of an exo gene cluster Mol Gen Genet 259(2), 161-171, 1998
Bairl A, Muller P A second gene for type I signal peptidase in Bradyrhizobium japonicum, sipF, is located near genes involved in RNA processing and cell division Mol Gen Genet 260(4), 346-356, 1998
Tully RE, van Berkum P, Lovins KW, Keister DL Identification and sequencing of a cytochrome P450 gene cluster from Bradyrhizobium japonicum Biochim Biophys Acta 1398(3), 243-255, 1998
Luka S, Stacey G Molecular studies on a new genetic locus linked to the common nodulation genes in Bradyrhizobium japonicum FEMS Microbiol Lett 148(2), 145-151, 1997
Kuykendall LD, Hunter WJ The sequence of a symbiotically essential Bradyrhizobium japonicum operon consisting of trpD, trpC and a moaC-like gene Biochim Biophys Acta 1350(3), 277-281, 1997

47 items found, displaying 1 to 25.[First/Prev] 1, 2 [Next/Last]

Strain PassportIAM 13628 Rhizobium sp.

Strain Passport
IAM 13628 Rhizobium sp.